PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G053300.3
Common NameB456_003G053300, LOC105787939
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 503aa    MW: 55507.8 Da    PI: 6.5775
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G053300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Gorai.003G053300.3  24 FLSKTYDVVDDPSTNSVISWSSANNSFVVWKVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 105
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Gorai.003G053300.3 106 LLKTISRRKP 115
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3419113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDSLHDSISA ANAVATNGNT VPPFLSKTYD VVDDPSTNSV ISWSSANNSF VVWKVPEFSR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKTI SRRKPANVHG  120
NQQPQVHSSA VGACIEVGTF GLEEEVERLK RDKNVLMQEL VRLRQQQQAT DNQLQAVGQR  180
VQVMEQRQQQ MMSFLAKAMQ SPGFLSQLVQ QQNESNRHLT GGNKKRRLSR QDEENLTGEH  240
GTIFPNRRIV KFQPSLNEAA KAMLHQILKM NTSPRLEPSI DNPDAFMIDG IPPSNALDSR  300
SCSSRISGVT LSEVPPASGQ SYLQAESGFP NSCPCTATHL TTESTNSGKI SDINQHKSQK  360
AAVFPTVPHM QGVVTDNDVG FTNASSGGGS QRVNAEYIDP VSAILNGARP IQTDDFSSDR  420
DMDMLLDGTP KLPAISDVFW EQFLTTSPPS GDSDEINSSS PENGASCEPE LLLGKNNGRD  480
RIQHTNHLTE QMGLLTTDNR RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-261511320129Heat shock factor protein 1
5d5v_B5e-261511320129Heat shock factor protein 1
5d5v_D5e-261511320129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024460.0KJ702446.1 Gossypium hirsutum heat shock transcription factor (HSF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470001.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470002.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470003.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470004.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470005.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470006.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470008.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470009.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470010.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotO818211e-159HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0D2QG070.0A0A0D2QG07_G
STRINGVIT_16s0039g01840.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-137heat shock factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]